Vincent Danos

Shared Models (3)

Growing ring and roaming agents
	This model grows a one dimensional ring and inserts new agents on it which diffuse along the ring; the idea is that this is a simple model of receptor clustering in a growing system.  It is an interesting exercise to refine the diffusion rule to be compatible with a simple Ising potential...

simple allosteric model
	This is a simple allosteric model. There are two agents called A and R, R has an internal state 0/1 that represents his conformation. Absent any A, R conformation is uniform. When A binds R, R prefers state 0. Thermodynamic consistency forces a relation between the equilibrium co...

Ising ring
	Init file   %agent:CheY(s~u~p) %agent:P(f~0~1,s,x,y) # uses the script for generating the ring/could also build it %init: 1 (P(f~0,s,x!0,y!1), P(f~0,s,x!1,y!2), P(f~0,s,x!2,y!3), P(f~0,s,x!3,y!4), P(f~0,s,x!4,y!5), P(f~0,s,x!5,y!6), P(f~0,s,x!6,y!7), P(f~0,...